REBASE::M.Pdo1047II has 472 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-15 43.0 0.0 5.3e-15 41.7 0.0 1.6 1 REBASE::M.Pdo1047II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pdo1047II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.7 0.0 5.3e-15 5.3e-15 18 187 .. 160 328 .. 156 336 .. 0.75
Alignments for each domain:
== domain 1 score: 41.7 bits; conditional E-value: 5.3e-15
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaa.llganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.i 105
a+v + + ge+ DP CG+G++l+ a ++ + a + ++++ ++ l g+D+ + vv+ a N+ g+g
REBASE::M.Pdo1047II 160 QAMVDCINPQMGETVCDPACGTGGFLLTAYdYMKGQSAS------------KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDrS 237
79************************9886245555552............223333366669**********************86505 PP
UPF0020 106 efsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer.alrkv 184
+++ d + +++ vdvi++npP+G r ++ ++Y e fl+ + +l++ggr+++++++n +e+ ++e + r
REBASE::M.Pdo1047II 238 PIVCEDSL--EkEPSTLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETiRKRLL 325
56665555..4458889************965555543678997533344448999999999***********99999888776555555 PP
UPF0020 185 kek 187
+ +
REBASE::M.Pdo1047II 326 QDF 328
555 PP
Or compare REBASE::M.Pdo1047II to CDD or PaperBLAST