REBASE::M.PfrJS11I has 534 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-15 42.9 0.0 4.1e-15 42.1 0.0 1.4 1 REBASE::M.PfrJS11I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PfrJS11I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.1 0.0 4.1e-15 4.1e-15 20 148 .. 219 341 .. 213 396 .. 0.82
Alignments for each domain:
== domain 1 score: 42.1 bits; conditional E-value: 4.1e-15
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgd.liefs 108
+v + ++++++ DP CG+ ++lI a +++ p +l + + + +++ + + g+D+d+ +++ a N g+++ +++++
REBASE::M.PfrJS11I 219 MVDMVAPQPTDTICDPACGTAGFLIGASEYVRDHHPEAL--------TDQQLRHHYHHEmFHGFDFDSTMLRIASMNMLLHGIEGaEVQYR 301
999999*********************999999998665........44455555444469**********************87357788 PP
UPF0020 109 qadaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
+ +eg++ ++++npP+ +l+ + + ++L + +
REBASE::M.PfrJS11I 302 DSLSEGAADDEGSYSLVLANPPFAGSLDYESTSKDLQQVV 341
877777778999****************999999997754 PP
Or compare REBASE::M.PfrJS11I to CDD or PaperBLAST