REBASE::M.PfrJS2I has 561 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-15 41.4 0.0 1.4e-14 40.4 0.0 1.5 1 REBASE::M.PfrJS2I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PfrJS2I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.4 0.0 1.4e-14 1.4e-14 20 148 .. 246 368 .. 240 411 .. 0.86
Alignments for each domain:
== domain 1 score: 40.4 bits; conditional E-value: 1.4e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgd.liefsq 109
+v + ++++++ DP CG+ ++lI a +++ p +l + + + +++ + + g+D+d+ +++ a N g+++ ++++++
REBASE::M.PfrJS2I 246 MVDMVAPQPTDTICDPACGTAGFLIGASEYVRDHHPEAL--------TDQQLRHHYHHEmFHGFDFDSTMLRIASMNMLLHGIEGaEVQYRD 329
999999*********************999999998665........44455555444469**********************873577788 PP
UPF0020 110 adaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
++e+++ ++++npP+ +l+ + + ++L + +
REBASE::M.PfrJS2I 330 SLSEGAANDEDSYSLLLANPPFAGSLDYESTSKDLQQVV 368
77777778999****************999999997765 PP
Or compare REBASE::M.PfrJS2I to CDD or PaperBLAST