REBASE::M.PfrJS9I has 534 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-14 40.7 0.0 1.9e-14 40.0 0.0 1.4 1 REBASE::M.PfrJS9I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PfrJS9I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.0 0.0 1.9e-14 1.9e-14 20 148 .. 219 341 .. 213 385 .. 0.85
Alignments for each domain:
== domain 1 score: 40.0 bits; conditional E-value: 1.9e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgd.liefsq 109
+v + ++++++ DP CG+ ++lI a ++ p +l + + + +++ + + g+D+d+ +++ a N g+++ ++++++
REBASE::M.PfrJS9I 219 MVDMVAPQPTDTICDPACGTAGFLIGASEYVRGHHPEAL--------TDQQLRHHYHHEmFHGFDFDSTMLRIASMNMLLHGIEGaEVQYRD 302
999999*********************999998888555........44455555444469**********************873577788 PP
UPF0020 110 adaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
+e+++ ++++npP+ +l+ + + ++L + +
REBASE::M.PfrJS9I 303 SLSEGAADDEDSYSLVLANPPFAGSLDYESTSKDLQQVV 341
77777778999****************999999997765 PP
Or compare REBASE::M.PfrJS9I to CDD or PaperBLAST