REBASE::M.Pni630II has 473 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-14 40.7 0.0 2.3e-14 39.7 0.0 1.5 1 REBASE::M.Pni630II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pni630II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.7 0.0 2.3e-14 2.3e-14 18 178 .. 160 318 .. 156 335 .. 0.74
Alignments for each domain:
== domain 1 score: 39.7 bits; conditional E-value: 2.3e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie.f 107
a+v + k ge+ DP CG+G++l+ a ++ +++ ++e+ ++ l g+D+ + vv+ a N+ g+g + +
REBASE::M.Pni630II 160 QAMVDCIKPKIGETVCDPACGTGGFLLAAYDCMKQQS-----------QDKDKREFLNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSpI 239
79************************97654333333...........23344444477779**********************8665514 PP
UPF0020 108 sqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekalee 178
+ d L+ +++ vdvi++npP+G r ++ ++Y e fl+ + +l++ggr+++++++n +e ++e
REBASE::M.Pni630II 240 ACEDS--LEkEPDTLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTGGRAAVVLPDNVLFEGGAGE 318
44444..55458889************965555443668887533333447888999999999999999999888876655 PP
Or compare REBASE::M.Pni630II to CDD or PaperBLAST