REBASE::M.Psp3121I has 494 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-15 43.5 0.0 2.4e-14 39.6 0.0 2.2 2 REBASE::M.Psp3121I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Psp3121I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.6 0.0 2.4e-14 2.4e-14 18 135 .. 157 266 .. 153 273 .. 0.84
2 ? 1.3 0.0 0.013 0.013 147 189 .. 299 342 .. 293 348 .. 0.82
Alignments for each domain:
== domain 1 score: 39.6 bits; conditional E-value: 2.4e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvg..dlie 106
a+v k+ge++ DP CG+G++l+ a +a+ p l+re++ +l +e l+g +l ++ + a N g+g +++
REBASE::M.Psp3121I 157 QAMVDCIAPKPGETICDPACGTGGFLLAAHNHVADHNPNLTREQKKHL---------KESALRGWELVQSTARLAAMNMMLHGIGsdKSVP 238
79***************************9999999998887655444.........455699***************9888776225677 PP
UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerl 135
+++ada + + + +dv+++npP+G++
REBASE::M.Psp3121I 239 IVVADALAAD-PGERFDVVLANPPFGKKS 266
7777777777.7779***********975 PP
== domain 2 score: 1.3 bits; conditional E-value: 0.013
UPF0020 147 eflrelkrvlrgggrlvlltaenkalekaleer.alrkvkeknv 189
+f + +k l+++gr+++++++n +e ++e + + +e v
REBASE::M.Psp3121I 299 NFVQHIKTLLKQHGRAAVVLPDNVLFEGGAGETiRKKLLHECDV 342
588999******************99988887766666666555 PP
Or compare REBASE::M.Psp3121I to CDD or PaperBLAST