REBASE::M.PspAT13I has 477 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-15 42.9 0.0 5.3e-15 41.7 0.0 1.5 1 REBASE::M.PspAT13I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PspAT13I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.7 0.0 5.3e-15 5.3e-15 18 187 .. 160 328 .. 156 336 .. 0.75
Alignments for each domain:
== domain 1 score: 41.7 bits; conditional E-value: 5.3e-15
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaa.llganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.ie 106
a+v + ge+ DP CG+G++l+ a ++ + a + + ++++ ++ l g+D+ + vv+ a N+ gvg
REBASE::M.PspAT13I 160 KAMVDCIAPQMGETVCDPACGTGGFLLTAYdYMKDQSA---N---------KEKRDFLRNKALHGVDNTPLVVTLASMNLYLHGVGTDrSP 238
699999*********************99724555555...2.........2233333555699*********************865055 PP
UPF0020 107 fsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer.alrkvke 186
+++ d + +++ vdvi++npP+G r ++ ++Y e fl+ + +l++ggr+++++++n +e+ ++e + r +
REBASE::M.PspAT13I 239 IVCEDSL--EkEPSTLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETiRKRLLQD 327
6665555..4458889************965555543678997533344448999999999***********9999988877655555555 PP
UPF0020 187 k 187
+
REBASE::M.PspAT13I 328 F 328
5 PP
Or compare REBASE::M.PspAT13I to CDD or PaperBLAST