REBASE::M.PspRep29I has 473 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-16 45.6 0.0 7.9e-16 44.4 0.0 1.5 1 REBASE::M.PspRep29I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PspRep29I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.4 0.0 7.9e-16 7.9e-16 16 190 .. 156 329 .. 153 335 .. 0.79
Alignments for each domain:
== domain 1 score: 44.4 bits; conditional E-value: 7.9e-16
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
L +a+v +++ + ge+ DP CG+G++l+ a +n +++a++++ +e l g D+ + vv+ a N+ g+g
REBASE::M.PspRep29I 156 LISAMVDVTRPQIGETVCDPACGTGGFLLAAYDYMKNQS-----------QDKAKRDFLREKALTGYDNTALVVTLASMNLYLHGIGTDR 234
678*************************98877777766...........5788888889999***********************8654 PP
UPF0020 106 e.fsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer.alrk 183
+ + + d + ++++ vdvi++npP+G r ++ ++Y e fl+ + +l++ gr+++++++n +e ++e + ++
REBASE::M.PspRep29I 235 SpILCEDSL--EkQPQKLVDVILANPPFGTRPAGSVDIdrPDFYVEtknnqlnFLQHIMVMLKNTGRAAVVLPDNVLFEGGAGETiRKEM 322
415554444..4347889*************87777664457887533333336777777788889999999999999998888878888 PP
UPF0020 184 vkeknvk 190
k +n +
REBASE::M.PspRep29I 323 LKNFNLH 329
8887776 PP
Or compare REBASE::M.PspRep29I to CDD or PaperBLAST