REBASE::M.Rde10917IV has 502 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-13 37.0 0.0 2.7e-13 36.2 0.0 1.4 1 REBASE::M.Rde10917IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.Rde10917IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.2 0.0 2.7e-13 2.7e-13 20 183 .. 180 346 .. 174 358 .. 0.76
Alignments for each domain:
== domain 1 score: 36.2 bits; conditional E-value: 2.7e-13
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgd.lief 107
+v + ++ +++ DP CG+ ++l+ a +++ v el +++ + ++ + g+D+d+ +++ a N+ gv++ l+e+
REBASE::M.Rde10917IV 180 MVDMVAPTAADTICDPACGTAGFLVAANEYVREHS-------VQELTNTVALRHYHNDMFHGFDFDSTMLRIASMNLLMHGVKNpLVEY 261
899999999***************97766666555.......45567777777777778**********************98736889 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeralrk 183
++ +++++ +i++npP+ +++ +++ ++L s fl + r l+ ggr+++++++ + + ++++lrk
REBASE::M.Rde10917IV 262 RDSLSEGAAGESEKYSLILANPPFTGSIDYEQTARDLQSTvktkktellFLALFLRLLKPGGRAAAIVPDGVLFGSSTAHKKLRK 346
99888888866669********************999886222222222445556666666666666666666666666555555 PP
Or compare REBASE::M.Rde10917IV to CDD or PaperBLAST