REBASE::M.Rgi145I has 487 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-13 36.9 0.0 5.8e-13 35.1 0.0 1.9 1 REBASE::M.Rgi145I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Rgi145I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.1 0.0 5.8e-13 5.8e-13 19 178 .. 162 324 .. 158 335 .. 0.76
Alignments for each domain:
== domain 1 score: 35.1 bits; conditional E-value: 5.8e-13
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
+++ l + ++ge+++DP G+G++l+ +++ ++ea ++++++ + g++l + + + N+ g+++++ + +
REBASE::M.Rgi145I 162 SIIHLVKPQPGEVIQDPAAGTGGFLVACDHYVKQQTD------DLYSLSEADRTFQRQDAFTGLELVHDTHRLCLMNLMLHGIEGRVRMGDT 247
57788999*****************965555555553......34478899999999999*******************************9 PP
UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal.ekLYs.........eflrelkrvlrgggrlvlltaenkalekalee 178
+ ++ + d+ivtnpP+G + g ++ + ++ + +f + + r+l+ ggr+++++++n +e+ ++
REBASE::M.Rgi145I 248 LSSDGEALS-RADLIVTNPPFGTKRGGERPNrASFVEtrgssnkqlAFVEHVYRNLAPGGRAAVVVPDNVLFEDNTGR 324
999988444.79**********87777666634554422222222246666777788888888888888888776655 PP
Or compare REBASE::M.Rgi145I to CDD or PaperBLAST