REBASE::M.Smu11343IV has 491 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.2e-15 41.3 0.0 1.4e-14 40.3 0.0 1.4 1 REBASE::M.Smu11343IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.Smu11343IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.3 0.0 1.4e-14 1.4e-14 18 183 .. 177 344 .. 172 356 .. 0.77
Alignments for each domain:
== domain 1 score: 40.3 bits; conditional E-value: 1.4e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
+ +v+l + ++++++ DP G+ ++l+ aa ++ l+++a +e + + g+++d+++++ a N++ g+++ +
REBASE::M.Smu11343IV 177 RMMVELMQPQQDDTICDPAMGTAGFLVNAAEYIQETHEDW-------LLDKAFREHYYGNMFNGMEIDPSMLRIASMNLQLHGIENPVL 258
68****************************9999998332.......56777777777777**************************** PP
UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeralrk 183
fs a+ + ++++ +i++npP+ +l+++ +L + fl+ + r++ ggr+++++++ + + +++a+rk
REBASE::M.Smu11343IV 259 FSGSALAERNSVNSQYSLILANPPFKGALNANDVESSLLQMtntkkteilFLSLMLRMMTLGGRAAVIVPDGVLFGSSTAHKAIRK 344
**9888888888889**********9998877655555443111223333566667777777777777777666666666666665 PP
Or compare REBASE::M.Smu11343IV to CDD or PaperBLAST