REBASE::M.Ssp1112II has 471 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-14 37.7 0.0 2.7e-13 36.1 0.0 1.8 1 REBASE::M.Ssp1112II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ssp1112II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.1 0.0 2.7e-13 2.7e-13 19 179 .. 160 321 .. 155 334 .. 0.80
Alignments for each domain:
== domain 1 score: 36.1 bits; conditional E-value: 2.7e-13
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.ief 107
+vr+++ ++ e+ lDP CG+G++l+E ++ ++ + aee+ +++l g+++++ a N+ gv+ ++
REBASE::M.Ssp1112II 160 FMVRMTDPNPHERVLDPACGTGGFLVETFEYLRKQYADGM---------SAEEADAIDANLQGIEKKSLPYLLATMNLLLHGVNRPnLTL 240
69*************************9887777775433.........56777778899***********************9862677 PP
UPF0020 108 sqadaakLr.lkegevdvivtnpPYG........erlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleer 179
+ + + ++++ vdv++tnpP+G + ++k+ ++ fl+ + ++l++ggr ++++++n +e ++e+
REBASE::M.Ssp1112II 241 DNTLHHPIAsHRHHRVDVVLTNPPFGgeeesrvlKNFPTEKRTNDTAWLFLQVIMERLKEGGRCAVVVPNNILFEGGVGEK 321
778888888767779**********94444322223445666677777899999999999999999999999998776666 PP
Or compare REBASE::M.Ssp1112II to CDD or PaperBLAST