REBASE::M.SspCFMR7I has 506 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.9e-14 37.7 0.0 1.8e-13 36.8 0.0 1.5 1 REBASE::M.SspCFMR7I
Domain annotation for each sequence (and alignments):
>> REBASE::M.SspCFMR7I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.8 0.0 1.8e-13 1.8e-13 20 146 .. 171 291 .. 166 348 .. 0.79
Alignments for each domain:
== domain 1 score: 36.8 bits; conditional E-value: 1.8e-13
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl.ief 107
+v++++ + + + DP CG+ ++l+ aa ++++ r+ +e++++ +e + g+D+d+ +++ + N g+++ i +
REBASE::M.SspCFMR7I 171 MVEMTQPGPRDEICDPACGTAGFLVQAAAYVQRVH----RDAL----LGVEQRKHfNESMFHGFDFDPTMLRIGSMNMLLHGIENPdIRY 252
9*******************************999....4444....4555556657788***********************9854999 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYs 146
++ + ++ + + +i++npP+ +l+ + + +L +
REBASE::M.SspCFMR7I 253 RDSLGENAAAEAERYSLILANPPFAGSLDYESTAVDLQR 291
99888888867779*************998887777655 PP
Or compare REBASE::M.SspCFMR7I to CDD or PaperBLAST