REBASE::M.Sth6578I has 552 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.7e-17 47.4 0.0 1.9e-16 46.4 0.0 1.4 1 REBASE::M.Sth6578I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sth6578I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.4 0.0 1.9e-16 1.9e-16 20 174 .. 196 354 .. 190 375 .. 0.76
Alignments for each domain:
== domain 1 score: 46.4 bits; conditional E-value: 1.9e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq. 109
+v++ + + ge+++DP CG+G++ + a + ++ r++++ + +e ++ +e +l+g++ + v + a N + g + +++
REBASE::M.Sth6578I 196 MVQIIDPEIGETIYDPACGTGGFIVR-AFEWVRAK--IERKTISAAEKERLLRNLKEKHLIGVEHVPIVFKLALMNMILHKDGSSLLQNDd 283
99999******************885.56666655..4677777777777777778889*****************877666655554431 PP
UPF0020 110 ...adaakLrlkegevdvivtnpPYG....erlgskkalekLYse.flrelkrvlrgggrlvlltaenkalek 174
+a++++ k+ ++dvi++npP+G erl + + kLY++ f + + + lr ggr++++++e + +
REBASE::M.Sth6578I 284 slsNKAQDIH-KN-KYDVILANPPFGptkqERLAQFEYHIKLYEAlFIQHMMNALRPGGRAAVVLKEGLLFDS 354
1115788888.55.8***********7777799999999****98579***************9998655443 PP
Or compare REBASE::M.Sth6578I to CDD or PaperBLAST