REBASE::M.VspI has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-15 41.7 0.3 4.4e-14 38.7 0.3 2.2 1 REBASE::M.VspI
Domain annotation for each sequence (and alignments):
>> REBASE::M.VspI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.7 0.3 4.4e-14 4.4e-14 29 139 .. 140 228 .. 134 246 .. 0.88
Alignments for each domain:
== domain 1 score: 38.7 bits; conditional E-value: 4.4e-14
UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegev 122
+ ++ DP CG+G +lIEa g + ++yg D+d+ +++ +r+ +++ + + ++++ d+ + + e+++
REBASE::M.VspI 140 ELTFCDPCCGTGNFLIEAVKRGFKPC-----------------------NIYGYDIDEVALEISRSRLKELCGVAESNIEKRDFLSASyQIEQKY 211
5689**************99999999.......................59******************9988777788888887777668889* PP
UPF0020 123 dvivtnpPYGerlgskk 139
dvi tnpP+G++l +k
REBASE::M.VspI 212 DVIFTNPPWGKKLPKKD 228
***********997764 PP
Or compare REBASE::M.VspI to CDD or PaperBLAST