REBASE::M1.PcoRK1I has 494 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-15 43.9 0.0 1.2e-14 40.6 0.0 2.2 2 REBASE::M1.PcoRK1I
Domain annotation for each sequence (and alignments):
>> REBASE::M1.PcoRK1I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.6 0.0 1.2e-14 1.2e-14 8 56 .. 95 143 .. 92 185 .. 0.82
2 ? 0.4 0.0 0.025 0.025 111 133 .. 295 319 .. 288 324 .. 0.75
Alignments for each domain:
== domain 1 score: 40.6 bits; conditional E-value: 1.2e-14
UPF0020 8 gpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapg 56
++++ ++++A al+++ ++++g++ lDP+CGsGt lIE + lg +++
REBASE::M1.PcoRK1I 95 YKGKFNPQVAKALLNIFKVEPGQTVLDPFCGSGTTLIECCHLGVDAVGT 143
57899*************************************9998854 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.025
UPF0020 111 daakLr..lkegevdvivtnpPYGe 133
d+ +L+ + ++d+ +t pPY
REBASE::M1.PcoRK1I 295 DVSELTadSAMRKFDAAITSPPYAM 319
6677775433349**********76 PP
Or compare REBASE::M1.PcoRK1I to CDD or PaperBLAST