PaperBLAST – Find papers about a protein or its homologs

 

Align S7S113 to PF16335 (GtaA_6_Hairpin)

S7S113 has 693 amino acids

Query:       GtaA_6_Hairpin  [M=343]
Accession:   PF16335.10
Description: Glutaminase A six helical-hairpin domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-161  522.0   4.7     4e-161  522.0   4.7    1.6  2  S7S113    


Domain annotation for each sequence (and alignments):
>> S7S113  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.15      0.15     190     250 ..     169     237 ..     151     263 .. 0.53
   2 !  522.0   4.7    4e-161    4e-161       1     343 []     342     691 ..     342     691 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.15
  GtaA_6_Hairpin 190 gdkedaekYssiAkeyakqweelalskdg........dhltlaygkedswslkYnlyadkllglnlfpe 250
                     gd++ +++++++ ++ + + + + +s+++        ++    y + +  +++Y    d +++ +++++
          S7S113 169 GDNSLTANWTTTTTSNILTHQVQLVSQTQfgevsdhiQQGSAYYSTASGNGVTYQTGQDTVVRAQFINN 237
                     444445555544444443332222222222333411222234455555666666666666666666655 PP

  == domain 2  score: 522.0 bits;  conditional E-value: 4e-161
  GtaA_6_Hairpin   1 gekYadilslsvRqafaalelvided.......skvllflKeissngnvntvDviypaaPlflylnpellkllLeplleyqesgrypkkyaihdl 88 
                     +++Ya+i++lsvRqaf+a+e+ i+++       ++vl+f+Keiss+gn+ntvDvi+pa+P+fly+np+l k+lL pl+eyq++g+yp+k+a+hd+
          S7S113 342 SSDYAAITALSVRQAFGATEISISKNsdgswntDDVLMFMKEISSDGNTNTVDVIFPAWPIFLYTNPALGKYLLLPLFEYQATGQYPNKWAVHDM 436
                     689********************8888999**9************************************************************** PP

  GtaA_6_Hairpin  89 GthYPnatgqndgkeeqmpveesgnmliltlayaqasgdtsylkqyyalLkqWadYLvengldpanqlstddfagalanqtnLalkgiiglkams 183
                     G+hYP+a g+ndg++e+mp+eesgnmli+tl+y+q+s+d+s++k+y++lL+qW++YL++++l+panq+stddfag+lanqtnLa+kgiig++ams
          S7S113 437 GAHYPQAVGHNDGNDEPMPLEESGNMLIMTLSYTQKSNDQSLIKSYSNLLDQWTQYLIQEALIPANQISTDDFAGSLANQTNLAIKGIIGIQAMS 531
                     *********************************************************************************************** PP

  GtaA_6_Hairpin 184 elakllgdkedaekYssiAkeyakqweelalskdgdhltlaygkedswslkYnlyadkllglnlfpesvydkqsafYatvkneyGvplDsrktyt 278
                     e+a+llgd ++a++YssiA++y+ qw++ a++++gdhltl+yg+++sw+l Ynlya+kllg++lfp+svy++qsa+Y+tv+++yGvplD+r+tyt
          S7S113 532 EVASLLGDGSRASNYSSIASSYVPQWQQFATASSGDHLTLSYGNSSSWGLSYNLYAEKLLGTKLFPDSVYQMQSAWYPTVARDYGVPLDTRHTYT 626
                     *********************************************************************************************** PP

  GtaA_6_Hairpin 279 ksdwelwtAalasdeetrealisdlakflnetktrvpltdlydtktgkqkgfkarpvvGglfall 343
                     ksdw +wtA +a++++tr+ +is+++k+++++k++ pl+d+y+t +g+ +gf+arpvvGg++all
          S7S113 627 KSDWSIWTAGIATSTTTRDLFISSVYKYASDGKSSQPLGDWYETVDGSVEGFRARPVVGGHLALL 691
                     *************************************************************9986 PP



Or compare S7S113 to CDD or PaperBLAST