PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::A0A4P9I8G4 to PF20238 (BIM1-like_dom)

SwissProt::A0A4P9I8G4 has 238 amino acids

Query:       BIM1-like_dom  [M=140]
Accession:   PF20238.2
Description: Copper acquisition factor BIM1-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    2.6e-34  104.9   1.1    3.6e-34  104.4   1.1    1.2  1  SwissProt::A0A4P9I8G4  


Domain annotation for each sequence (and alignments):
>> SwissProt::A0A4P9I8G4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   1.1   3.6e-34   3.6e-34       1     140 []      19     170 ..      19     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 3.6e-34
          BIM1-like_dom   1 sahfallyPpsrgfdedkentaPCGgf.asvgnrtefpltggavlllss.hpsanvavrlslgn.ptsnsdfntl.....leppvvqe 80 
                            +ahf+l++P  rg   ++++ + CG   + ++nrt+fpl+g+ +++++s h  ++v   +sl++  ++ +df+++     +  +  q 
  SwissProt::A0A4P9I8G4  19 QAHFQLQWPGARGAFVANDEVYFCGAHnNVTTNRTDFPLDGSGFVSIKSgHAPYTVGAIISLETdADAWEDFKNSsggdqIAIAYRQV 106
                            69************************989999*****************9***********997444445998887766533333333 PP

          BIM1-like_dom  81 tgaGhfClpkvdlpss......aGtnatlqvvysge.galYqCadvtfvesasaksassstCfnstg 140
                             + G++C+p  +++s       +G+nat+qvvy+g+ g+lYqCadvtf   ++ ++ +ss C+nstg
  SwissProt::A0A4P9I8G4 107 DNSGTYCVPF-NPSSLniagiqDGANATIQVVYTGGdGNLYQCADVTFR--TTVANLNSSVCTNSTG 170
                            478******8.444446999966**********777689**********..777789********96 PP



Or compare SwissProt::A0A4P9I8G4 to CDD or PaperBLAST