SwissProt::F4JD14 has 1941 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9e-64 202.0 0.7 4.3e-51 160.2 0.2 2.1 2 SwissProt::F4JD14
Domain annotation for each sequence (and alignments):
>> SwissProt::F4JD14
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 160.2 0.2 4.3e-51 4.3e-51 33 297 .. 321 594 .. 318 604 .. 0.93
2 ! 40.2 0.0 1e-14 1e-14 343 483 .. 721 860 .. 656 863 .. 0.81
Alignments for each domain:
== domain 1 score: 160.2 bits; conditional E-value: 4.3e-51
DUF4704 33 iqvLfPLfsqldqaeedeqlege...seadeklcatlleliaelleesetnqqqllrlkGflvls....flLqsvspkhLtlevlsalksll 117
+++L+PL ++ ++++ e+ + + s ++++l+a ++++i+ +++ ++ n+++l r++G+++l+ +lL s+ + +++ + + ++l+
SwissProt::F4JD14 321 PMSLLPLTVSSVHKDNLEPCSRNvpsSLTTYSLAAPIFRMISFAIK-HPGNNEELSRTRGPEILAtvlgYLLHSLASFDIKHDRVG-DEELV 410
689***************999989999******************9.**************99887777************99986.67777 PP
DUF4704 118 kvlksl..an..selLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlrlldilkqfYwvenaksksgvtsks 205
++++sl ++ +++L ++l+ +ll++k+W ++y +Qk+L+s+L ++++++ t +r++ +++ lld +++++w ++k++v ++s
SwissProt::F4JD14 411 AAIVSLcqSQkiNHALKVQLFCTLLLDLKIWSVCSYRLQKKLLSSLQDMVFTEA---TAMRNADAIQVLLDGCRRYFWTI--QEKDSVNTFS 497
777777565589*****************************************7...99*******************96..8********* PP
DUF4704 206 lleeRpsqeeilklrallLslieqlvrks.seisesevkalinyletvqddenvedvLelvirllseks....asflealdskggieiflkL 292
l+++ ++ e+++l++ lL++ie l+ + + ++++++ l+ ++ ++ + ++v++vL+l+ rl+++++ ++f+ea+ +ggie++l L
SwissProt::F4JD14 498 LDGDARQVGEVNALVDELLVIIELLMGAAsPSFAADDLHRLLGFIIESPQPNQVARVLHLMFRLVVQPNaakaQTFAEAFITSGGIETLLVL 589
**************************98736899**********************************77788******************* PP
DUF4704 293 Lsres 297
++++
SwissProt::F4JD14 590 IANRV 594
*9875 PP
== domain 2 score: 40.2 bits; conditional E-value: 1e-14
DUF4704 343 eltdktynvLfevllekaspkivlekhsepekssklelPqilkviakllsqskdsesielrkkiLsdllvLlksnrenrrallqmsvWqewL 434
+td++y +L ++++ s++ + + + ++e+Pq+l ++++ l+ +++ l+++ L+d+l L + +e r +l +m++W ew+
SwissProt::F4JD14 721 LMTDNVYTTLLGASVNASSTE---DGLNFCDLGHRFEHPQLLLILLRSLPFASK----ALQNRALQDILFLACTHPEKRSSLTKMEEWPEWI 805
455555555555554444443...33344455589***************9999....478999**************************** PP
DUF4704 435 valaklaeikeee.......eseikelvielfkvLlvhalktekgGwrvlvdtlai 483
++++ ++ k++ ++e+++l+ + + ++l h++ k+Gw++++ t+ +
SwissProt::F4JD14 806 LEILISNYEKDAGkqsaspgSAEEEDLIHNFLIIMLEHSM-RQKDGWKDIEATIHC 860
**98877776666689999779******************.889*******99977 PP
Or compare SwissProt::F4JD14 to CDD or PaperBLAST