PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::O94520 to PF06417 (DUF1077)

SwissProt::O94520 has 193 amino acids

Query:       DUF1077  [M=118]
Accession:   PF06417.16
Description: Protein of unknown function (DUF1077)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.3e-49  153.3   0.8    2.3e-49  152.5   0.8    1.4  1  SwissProt::O94520  


Domain annotation for each sequence (and alignments):
>> SwissProt::O94520  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.8   2.3e-49   2.3e-49       3     116 ..      64     176 ..      62     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 2.3e-49
            DUF1077   3 keeeeelkekkaweialapakslpmnlfmmYmsGnslqifsimmvlmllvnpikallsinkaFkklesekeksklllqklvyvllqllllal 94 
                        +e +++l  kkawe+a +p+k++pmn+++ YmsGnslqifsim++lmllvnp+ka++s+ +aF+++++++   +l+ ++ +y+l+qlll+++
  SwissProt::O94520  64 EELQKDLLLKKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPLKAITSTGSAFTPFKGTHP-GTLWPAMGAYILFQLLLMGI 154
                        5678999**************************************************************88.89999*************** PP

            DUF1077  95 glyklnsmGLlPttssDWlafe 116
                        g+ykl+ mGLlPtt+sDWla+e
  SwissProt::O94520 155 GVYKLQRMGLLPTTTSDWLAWE 176
                        *********************8 PP



Or compare SwissProt::O94520 to CDD or PaperBLAST