SwissProt::P0C2H4 has 958 amino acids
Query: DUF4962 [M=476]
Accession: PF16332.9
Description: Domain of unknown function (DUF4962)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-11 29.3 4.7 1.6e-11 29.3 4.7 2.2 3 SwissProt::P0C2H4
Domain annotation for each sequence (and alignments):
>> SwissProt::P0C2H4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.0 0.043 0.043 131 177 .. 37 85 .. 23 101 .. 0.79
2 ! 29.3 4.7 1.6e-11 1.6e-11 254 414 .. 149 314 .. 109 354 .. 0.81
3 ? -1.6 0.1 0.04 0.04 224 253 .. 779 808 .. 734 814 .. 0.72
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.043
DUF4962 131 aklkksHPrilllkkdwedfikrnkdnpea..kayikkaekllkkplek 177
+ + +sHP ++ +++ ++ r ++++e+ + + + +++l++ple
SwissProt::P0C2H4 37 NANYDSHPMLYFSRAEVAELQLRAASSHEHiaARLTEAVNTMLSSPLEY 85
556678***********99999999988862155677778899999975 PP
== domain 2 score: 29.3 bits; conditional E-value: 1.6e-11
DUF4962 254 FnaatllsllalaYDsfYdllteeekkllkkeikergkkiyk.efvnrlenhiadnHvWqmtlRiltlaalav.vgelpeAdkWldyvYevW 343
a l a+aYD Y++l+++++++++++i + + +y+ ++ + nH + lt + + + g l+eA W++ v +
SwissProt::P0C2H4 149 VPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYEtSYRRGWGFQYLHNHQPTNCMALLTGSLVLMnQGYLQEAYLWTKQVLTIM 240
5567788899*******************************7368999*********99999988886654442578*************** PP
DUF4962 344 vaRfPvL..nkDGgWHngdsYfkvnlrtlievpalyselsGvdfFsdpWyknlalyvlysq.ppfsksagnGds 414
+ L +DG+ ++g +Y + +r+l + l ++ +++F +pW+k ++ + p f ++ ds
SwissProt::P0C2H4 241 EKSLVLLreVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFDINHFGHPWLKQHFAFMYRTIlPGFQRTVAIADS 314
****9998789****************************************99888654441445555555555 PP
== domain 3 score: -1.6 bits; conditional E-value: 0.04
DUF4962 224 LtkDkkyakeaikrllellsmdkskavkgD 253
Dk+ ++eai+r+ +++ ++++++k+
SwissProt::P0C2H4 779 RFSDKRQTEEAIDRIFAISQQQQQQQSKSK 808
3569999**********9999987777655 PP
Or compare SwissProt::P0C2H4 to CDD or PaperBLAST