PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P0DSE1 to PF09291 (DUF1968)

SwissProt::P0DSE1 has 268 amino acids

Query:       DUF1968  [M=81]
Accession:   PF09291.14
Description: Domain of unknown function (DUF1968)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    4.1e-42  128.4   4.1    7.1e-42  127.7   4.1    1.4  1  SwissProt::P0DSE1  


Domain annotation for each sequence (and alignments):
>> SwissProt::P0DSE1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   4.1   7.1e-42   7.1e-42       1      74 [.     134     207 ..     134     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 7.1e-42
            DUF1968   1 PavYqLkspkssdtsvCLfTDFdsqvnvsqskeseviktdktvldmksldsKSngavaWsnksdfkCqdtfkee 74 
                        PavYqL+++kssd+svCLfTDFdsq+nvsqsk+s+v++tdktvldm+s+d+KSn+avaWsnksdf+C+++f+++
  SwissProt::P0DSE1 134 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNS 207
                        9***********************************************************************93 PP



Or compare SwissProt::P0DSE1 to CDD or PaperBLAST