SwissProt::P50840 has 385 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.5e-74 234.5 0.0 6.4e-74 234.0 0.0 1.2 1 SwissProt::P50840
Domain annotation for each sequence (and alignments):
>> SwissProt::P50840
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 234.0 0.0 6.4e-74 6.4e-74 1 195 [. 164 368 .. 164 370 .. 0.97
Alignments for each domain:
== domain 1 score: 234.0 bits; conditional E-value: 6.4e-74
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk.. 78
RgyRv++g+ap+ketLAaalv+l++w++++p++DP+CGsGti+IEaal+g+niapg++r+fv+e ++ e+ee+a+++++
SwissProt::P50840 164 RGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEdwewigkdlwnkARLEVEEKANYDQPlt 255
9**************************************************************************9999*******777777 PP
UPF0020 79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenk 170
+++sD+d+r+vq a+eNae+ag+gdli+f+q+++++++ ++ e++viv+npPYGerlg+kka+e++Y+e++++++ l++ ++v+++++n+
SwissProt::P50840 256 IFASDIDHRMVQIAKENAEEAGLGDLIQFKQMQVKDFT-TNLEFGVIVGNPPYGERLGEKKAVEQMYKEMGQAFEP-LDT--WSVYMLTSNE 343
**************************************.999*********************************9.999..********** PP
UPF0020 171 alekaleeralrkvkeknvklglll 195
++e+a++++a++k+k++n+ +++++
SwissProt::P50840 344 NFEEAYGRKATKKRKLFNGFIKTDY 368
********************99876 PP
Or compare SwissProt::P50840 to CDD or PaperBLAST