PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P59994 to PF11879 (DUF3399)

SwissProt::P59994 has 647 amino acids

Query:       DUF3399  [M=76]
Accession:   PF11879.12
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.9e-36  109.1   4.6    1.3e-35  108.1   4.6    1.6  1  SwissProt::P59994  


Domain annotation for each sequence (and alignments):
>> SwissProt::P59994  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   4.6   1.3e-35   1.3e-35       2      75 ..     471     549 ..     470     550 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1.3e-35
            DUF3399   2 tsllEsQHHHLLhCLEKTTnheFvdEqtyeenclevslqkrpsrspslssq....egltssCCsrrakr.sirlpnssl 75 
                        +s++E+QHHHLLhCLEKTT+heF+dE t++e++ +vsl  r+srs+s+ssq    ++l ssCC+rrakr +irl+ns++
  SwissProt::P59994 471 RSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSLGGRTSRSTSVSSQpvgpSSLLSSCCPRRAKRrAIRLANSTA 549
                        79****************************************************99************77*******86 PP



Or compare SwissProt::P59994 to CDD or PaperBLAST