SwissProt::Q16VD3 has 1250 amino acids
Query: UBAP2-Lig [M=33]
Accession: PF12478.12
Description: UBAP2/protein lingerer
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-24 71.3 0.7 1.5e-23 69.0 0.4 2.4 2 SwissProt::Q16VD3
Domain annotation for each sequence (and alignments):
>> SwissProt::Q16VD3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 0.13 0.13 8 14 .. 459 465 .. 458 473 .. 0.76
2 ! 69.0 0.4 1.5e-23 1.5e-23 1 33 [] 538 572 .. 538 572 .. 0.98
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.13
UBAP2-Lig 8 sAVEMPg 14
+A EMP
SwissProt::Q16VD3 459 QALEMPQ 465
89****6 PP
== domain 2 score: 69.0 bits; conditional E-value: 1.5e-23
UBAP2-Lig 1 PpSkIPasAVEMPgda..nissLDVQFGaldFGse 33
PpSkIP+sAVEMPgd+ ni++LDVQFG+ldFG++
SwissProt::Q16VD3 538 PPSKIPSSAVEMPGDSlnNIGYLDVQFGGLDFGTD 572
9********************************97 PP
Or compare SwissProt::Q16VD3 to CDD or PaperBLAST