SwissProt::Q54BW1 has 561 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-15 42.3 0.1 7.8e-13 34.7 0.1 3.5 2 SwissProt::Q54BW1
Domain annotation for each sequence (and alignments):
>> SwissProt::Q54BW1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.7 0.1 7.8e-13 7.8e-13 29 137 .. 293 436 .. 249 446 .. 0.71
2 ? 1.3 0.0 0.013 0.013 139 185 .. 491 537 .. 487 545 .. 0.87
Alignments for each domain:
== domain 1 score: 34.7 bits; conditional E-value: 7.8e-13
UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvye................lkaeaeeearaelk...lygsDldrrvvqgareNaekagv 101
+ + DP+ GsGt+ Ea + ++ p + + ++ +++ + + +k l+gsD+d+++++ + N++k g
SwissProt::Q54BW1 293 KTNIWDPFVGSGTLIQEAISMLLKAKPSSCTNYKRSfqferfknhsterylkYLESINKPISPLIKntiLIGSDIDQKAIDSSIFNLSKQGY 384
35799**************999999887653333224567******99987777777777775555667*********************99 PP
UPF0020 102 gd.liefsqadaakLr...............lkegevdvivtnpPYGerlgs 137
++ i+f + d++++ +++++ +i+tn+PYG r+ +
SwissProt::Q54BW1 385 QHeNIKFFKGDFKSIYldqinidnsldddgdNNNNKPFTIITNLPYGTRVLN 436
76269****999988766776666665655433444459*********9865 PP
== domain 2 score: 1.3 bits; conditional E-value: 0.013
UPF0020 139 kalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvk 185
k+l++L++ f++ +++ ++ r v+++++n+ ++++ ++ ++++
SwissProt::Q54BW1 491 KDLRDLFKRFGDMIHESNESVLRDVFVLNGNSHFQSISTNNGKNNFE 537
67899***********999999*************999888776665 PP
Or compare SwissProt::Q54BW1 to CDD or PaperBLAST