SwissProt::Q6C0J1 has 261 amino acids
Query: BIM1-like_dom [M=140]
Accession: PF20238.2
Description: Copper acquisition factor BIM1-like
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-33 101.0 0.1 6.9e-33 100.3 0.1 1.3 1 SwissProt::Q6C0J1
Domain annotation for each sequence (and alignments):
>> SwissProt::Q6C0J1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.3 0.1 6.9e-33 6.9e-33 1 140 [] 16 160 .. 16 160 .. 0.87
Alignments for each domain:
== domain 1 score: 100.3 bits; conditional E-value: 6.9e-33
BIM1-like_dom 1 sahfallyPpsrgfdedkentaPCGgfasvgnrtefpltggav.lllss.hpsanvavrlslgn.......ptsnsdfntlleppvvqetga 83
+ahf++ yP +rg+++ +++++PCGg ++ g+r f+++g++v +ll++ h+sa +++rl lg+ + ++df+++l+ p+++ ga
SwissProt::Q6C0J1 16 NAHFTVYYPGWRGDSHPTQTQGPCGGLNKIGER--FKVNGKSVdVLLKTsHTSAITEYRLCLGDdcgtksgSDGQKDFSKVLYGPINEL-GA 104
79*************************999988..999999999999999***********998776444333367*****99999888.** PP
BIM1-like_dom 84 GhfClpkvdlpss.aGtnatlqvvysge.galYqCadvtfvesasaksassstCfnstg 140
G+fC+p+++l + +G+++t+qv+ ++ g+lY+C+d ++ +s +a + C+nstg
SwissProt::Q6C0J1 105 GNFCMPGLPLGDLkDGQKGTIQVIMQAVdGNLYNCIDFEVDNSV---DAFNAVCKNSTG 160
*******99999966**********888789**********333...35689*****96 PP
Or compare SwissProt::Q6C0J1 to CDD or PaperBLAST