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Align SwissProt::Q6ZS30 to PF15787 (DUF4704)

SwissProt::Q6ZS30 has 2694 amino acids

Query:       DUF4704  [M=486]
Accession:   PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.3e-37  114.9   4.0    2.3e-37  114.9   4.0    3.7  3  SwissProt::Q6ZS30  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q6ZS30  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.4      0.29      0.29     299     357 ..      66     124 ..      62     150 .. 0.63
   2 ?   -0.9   0.2     0.031     0.031     405     437 ..     293     325 ..     231     407 .. 0.57
   3 !  114.9   4.0   2.3e-37   2.3e-37      18     320 ..     859    1173 ..     854    1291 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 0.29
            DUF4704 299 aiRllaLkllgklllrspvkrksevmeaknlfsliserLllfseeltdktynvLfevll 357
                        + R++ L+++ k+   +  +++  ++   + f+++ ++L+  +e  t +  n+   + +
  SwissProt::Q6ZS30  66 VLRIQLLQCVQKMADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINYVITMTT 124
                        56888888888888888877777777777777777777777775555555555544444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.031
            DUF4704 405 kiLsdllvLlksnrenrrallqmsvWqewLval 437
                        +iL++   Ll+s +++  +     +W++ ++al
  SwissProt::Q6ZS30 293 TILENYFKLLNSDHSALPNQRRSRQWENRFIAL 325
                        456666666666655555555555555444443 PP

  == domain 3  score: 114.9 bits;  conditional E-value: 2.3e-37
            DUF4704   18 vvthsiqsilesvGGiqvLfPLfsqldqaeedeqlege..........................seadeklcatlleliaelleesetnq 81  
                         vv  +i++i++++GG +vLfPL++q+ + +e +  e++                          s  + +l+at + ++++ ++ ++ nq
  SwissProt::Q6ZS30  859 VVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQIPEEKnestvpesvtpvegdwlvwtstkaseSRLERNLVATFILIVKHFIQRHPINQ 948 
                         78889***********************99987555557789*******************9999999********************** PP

            DUF4704   82 qqllrlkGflvlsflLqsvspkhLtlevlsalksllkvlkslanselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkilt 171 
                          +l++++G++ l+ lLq+v+++ + ++vl a++ l++++ sl ++ +Ll+++ +++l+++++W + d+       +yL+t++ ++ ++  
  SwissProt::Q6ZS30  949 GNLIHSHGVATLGALLQKVPSTLMDVNVLMAVQLLIEQV-SLEKNMQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRV-- 1035
                         **************************************9.6668***************************************99866.. PP

            DUF4704  172 nlrrvstVlrlldilkqfYwvenaksksgvtskslleeRpsqeeilklrallLslieqlvrksseisesevkalinyletvqddenvedv 261 
                           r+  +V+ lld+l+ +Y         ++          s ++i ++r  l  li+  + k+   s +e+++++ y++ ++++e++  +
  SwissProt::Q6ZS30 1036 -FRKKYGVQFLLDTLRIYYGNGC-----KYN-------ELSLDDIRTIRTSLYGLIKYFLCKG--GSHEEIQSIMGYIAATNEEEQLFGI 1110
                         .89999999**********8652.....222.......33678********************..99*********************** PP

            DUF4704  262 Lelvirllseks...asflealdskggieiflkLLsre..seaiRllaLkllgklllrspvkrk 320 
                         L+ + +ll  ++   + fl  ++  g  +i+  LL ++  s   R  + k++ ++l+   v   
  SwissProt::Q6ZS30 1111 LDVLFSLLRTSPtrgQLFLLLFEP-GNADILYALLLNQkySDRLREIIFKIMEQMLKCTNVYER 1173
                         **********99895666666655.556777777755411566677788999888875554332 PP



Or compare SwissProt::Q6ZS30 to CDD or PaperBLAST