PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q703I1 to PF05604 (DUF776)

SwissProt::Q703I1 has 291 amino acids

Query:       DUF776  [M=180]
Accession:   PF05604.15
Description: Protein of unknown function (DUF776)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.6e-99  317.7  10.8    2.1e-99  317.2  10.8    1.2  1  SwissProt::Q703I1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q703I1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.2  10.8   2.1e-99   2.1e-99       1     180 []       1     180 [.       1     180 [. 0.99

  Alignments for each domain:
  == domain 1  score: 317.2 bits;  conditional E-value: 2.1e-99
             DUF776   1 mkseakdgeeeslqtafkklrvdasGsiaslsvgegtsvrasvraavddakpktaCaskdsWhgstrkssrGavrtqrrrrsksPvlhPPkf 92 
                        mkseakdgeeeslqtafkklrvdasGsi+slsvgegtsvrasvr++vdd+kpkt+Ca kdsWhgstrkssrGavr qrrrrsksPvlhPPkf
  SwissProt::Q703I1   1 MKSEAKDGEEESLQTAFKKLRVDASGSIVSLSVGEGTSVRASVRTTVDDTKPKTMCAPKDSWHGSTRKSSRGAVRIQRRRRSKSPVLHPPKF 92 
                        9******************************************************************************************* PP

             DUF776  93 iycstkaspsssqlkhksqtdspdsssglGistkkefsaaessssldanhtgavvePlrasvprlaseskkedssdasqvsqaslkan 180
                        i+cst+aspsssqlk++sqt++ d+ssg+Gist+kefs++e+s+sld nhtga++ePlr+sv rl+sesk+e+ sda+qvs +sl+an
  SwissProt::Q703I1  93 IHCSTTASPSSSQLKQRSQTEPLDGSSGRGISTPKEFSTGENSTSLDINHTGAAIEPLRSSVLRLPSESKTEELSDATQVSPESLTAN 180
                        ************************************************************************************9986 PP



Or compare SwissProt::Q703I1 to CDD or PaperBLAST