PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q8VY49 to PF04367 (DUF502)

SwissProt::Q8VY49 has 256 amino acids

Query:       DUF502  [M=107]
Accession:   PF04367.18
Description: Protein of unknown function (DUF502)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.3e-32   98.1   1.6    1.6e-32   97.9   0.1    1.8  2  SwissProt::Q8VY49  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q8VY49  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.11      0.11       6      32 ..      61      87 ..      57      91 .. 0.76
   2 !   97.9   0.1   1.6e-32   1.6e-32       2     103 ..     103     203 ..     102     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
             DUF502  6 lillvGllarnllgrkllellerller 32
                       +++l+ ++++ + + +++++++ +++ 
  SwissProt::Q8VY49 61 CVILLPIAVTFYTTWWFIHFVDGFFSP 87
                       567777888888888999999888765 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 1.6e-32
             DUF502   2 lvlllillvGllarnllgrkllellerlleriPlvksiYssvkqlvetll.geekkkfkkvvlVeiyprkglyalGFvtged.egelaekeg 91 
                        + +++i+lvG++++++lg ++l+l+e++++r+P+v++iY+++kq++++++ ++++++fk+v++++  pr g ya+GF+t++   ++ +  ++
  SwissProt::Q8VY49 103 TSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISpDQNTQAFKEVAIIR-HPRVGEYAFGFITSTVvLQNYP--TE 191
                        689***********************************************777888*********.8**************9766555..6* PP

             DUF502  92 eelvaVfvPtsp 103
                        eel++V+vPt++
  SwissProt::Q8VY49 192 EELCCVYVPTNH 203
                        **********86 PP



Or compare SwissProt::Q8VY49 to CDD or PaperBLAST