PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9FD33 to PF16155 (DUF4863)

SwissProt::Q9FD33 has 176 amino acids

Query:       DUF4863  [M=153]
Accession:   PF16155.10
Description: Domain of unknown function (DUF4863)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    7.7e-67  210.1   0.0    8.8e-67  210.0   0.0    1.0  1  SwissProt::Q9FD33  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9FD33  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   0.0   8.8e-67   8.8e-67       3     153 .]      11     170 ..       9     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 8.8e-67
            DUF4863   3 iaeflaeiedltldkeleerLneeygagselyedlaalirqgvaegWvakeeidGakyrrgriakpseetkgfsidvvele.........ee 85 
                        + +fla+++d+t+++++e++Lne+yg++se+y+++++l+ +gvaegW+a++ei G++yrr+r+++p++et +fsi++v+++         + 
  SwissProt::Q9FD33  11 CIDFLAKVKDKTANANIERWLNENYGPDSETYQKISTLVIDGVAEGWAANDEISGPHYRRSRLCEPCAETFYFSITAVYMDskgheldnqQR 102
                        679************************************************************************************99888 PP

            DUF4863  86 dvagqyHrHPyGeinlvvpldesaelkglegwqgaGWtvpgpgsaHyPevrgGaavvlflLPaGriey 153
                         ++g+yH+HPyGe+n+v+plde+a l+g  gwqgaGWt+p+pgs+HyPev++Ga++++f+LPaGri+y
  SwissProt::Q9FD33 103 TFRGDYHSHPYGELNMVIPLDEGAVLAGPLGWQGAGWTAPAPGSQHYPEVKNGALIAFFFLPAGRISY 170
                        9*****************************************************************99 PP



Or compare SwissProt::Q9FD33 to CDD or PaperBLAST