PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9P7G8 to PF04241 (DUF423)

SwissProt::Q9P7G8 has 118 amino acids

Query:       DUF423  [M=87]
Accession:   PF04241.19
Description: Protein of unknown function (DUF423)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    7.5e-28   82.9   0.6      1e-27   82.5   0.6    1.2  1  SwissProt::Q9P7G8  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9P7G8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.6     1e-27     1e-27       1      87 []      17     106 ..      17     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 1e-27
             DUF423   1 lGAfGaHglkkk.leeeqlevfetavqYqlyhalallavallaeaaaakllklagllflaGivlFSgslyllaltgd.....kllgaitPiG 86 
                        lGA+G+Hgl+k+  +++ l++++ta +Y ++h+la +av+l+   +   + +++g l+++G +lFSg++y l+l  +     ++lg++tPiG
  SwissProt::Q9P7G8  17 LGAYGSHGLQKRvQDPHLLKSWSTACTYLMFHSLATMAVSLH---PVYGKSRWTGPLLITGSCLFSGTIYGLCLLPKghslrRILGPLTPIG 105
                        7*********9945559************************9...78899************************66667888********** PP

             DUF423  87 G 87 
                        G
  SwissProt::Q9P7G8 106 G 106
                        9 PP



Or compare SwissProt::Q9P7G8 to CDD or PaperBLAST