SwissProt::Q9W4E2 has 3466 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-205 668.8 16.2 2.6e-205 668.8 16.2 2.3 2 SwissProt::Q9W4E2
Domain annotation for each sequence (and alignments):
>> SwissProt::Q9W4E2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 668.8 16.2 2.6e-205 2.6e-205 2 486 .] 630 1123 .. 629 1123 .. 0.97
2 ! 1.0 0.6 0.0078 0.0078 326 385 .. 1678 1737 .. 1659 1743 .. 0.89
Alignments for each domain:
== domain 1 score: 668.8 bits; conditional E-value: 2.6e-205
DUF4704 2 advhspealilngvqlvvthsiqsilesvGGiqvLfPLfsqldqaeedeqlegeseadeklcatlleliaelleesetnqqqllrlkGfl 91
++vh+p+al+l++v++vvthsi+ +l+s+GGiqvLfPLfsqld+a+e g+ ++d++lc++ll++i+el+e+s+t+qq++++++Gfl
SwissProt::Q9W4E2 630 YFVHTPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPLFSQLDMAHEGL---GDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRGFL 716
89********************************************996...88889********************************* PP
DUF4704 92 vlsflLqsvspkhLtlevlsalksllkvlksl..anselLlkdlv..........dsillnpklWiytdyeVQkeLysyLatdfvsdkki 169
v+sf+Lq++s++hLtlevl ++++l+k+l+++ ans+lLlk+l+ d++l+np+lWiyt+ +VQ +LysyLat+f+sd++i
SwissProt::Q9W4E2 717 VISFMLQRSSREHLTLEVLGSFLNLTKYLVTClsANSDLLLKQLFcfsfltwqllDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQI 806
********************************977799999975333333333339********************************** PP
DUF4704 170 ltnlrrvstVlrlldilkqfYwvenaksksgvtskslleeRpsqeeilklrallLslieqlvrksseisesevkalinyletvqddenve 259
++n+rrvstVl+++++lk++Ywv+n++ ksg+++k+l+++Rp+q++il++ra++L +++ql++ +++++e+e+++++nyl+t+++den++
SwissProt::Q9W4E2 807 YSNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLH 896
****************************************************************************************** PP
DUF4704 260 dvLelvirllseksasflealdskggieiflkLLsreseaiRllaLkllgklllrspvkrksevmeaknlfsliserLllfseeltdkty 349
dvL+++i+l+se+++s+++a+d k+g++ ++kLL++es++iRl+aLkllg++l+rs++krk++vm+++nl++l++erLll++e+l+++ty
SwissProt::Q9W4E2 897 DVLQMLISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLLYEESLSLPTY 986
****************************************************************************************** PP
DUF4704 350 nvLfevllekaspkivlekhsepekssklelPqilkviakllsqskdses.ielrkkiLsdllvLlksnrenrrallqmsvWqewLvala 438
nvL+e+++e++s++i++++h epe++++le+P+ilkv+a+l++qsk++es i+++k++L+d++ L++snrenrr++lqmsvWqewL+a+a
SwissProt::Q9W4E2 987 NVLYEIMTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQTESlIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMA 1076
****************************************************************************************** PP
DUF4704 439 klaeikeeeeseikelvielfkvLlvhalktekgGwrvlvdtlailhs 486
+++++++ee ++i+++v++lf++Ll+ha+k+e+gGwrv+vdtlai+hs
SwissProt::Q9W4E2 1077 YIHPKSSEE-QKISDMVYSLFRMLLHHAIKHEYGGWRVWVDTLAIVHS 1123
*********.************************************96 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.0078
DUF4704 326 aknlfsliserLllfseeltdktynvLfevllekaspkivlekhsepekssklelPqilk 385
++ ++e+L + +ee + n + l++++++ + e++ +++ + + Pqil
SwissProt::Q9W4E2 1678 EQQKSQEVAEELPQKPEEQVVAIVNQVLDTLVDDTVKAVAAEQTTQTSPAPEEQSPQILA 1737
455566799*************************************************96 PP
Or compare SwissProt::Q9W4E2 to CDD or PaperBLAST