PaperBLAST – Find papers about a protein or its homologs

 

Align TCDB::Q9L651 to PF07242 (DUF1430)

TCDB::Q9L651 has 648 amino acids

Query:       DUF1430  [M=100]
Accession:   PF07242.16
Description: Protein of unknown function (DUF1430)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-26   78.3  11.4    2.4e-26   78.3  11.4    4.8  4  TCDB::Q9L651  


Domain annotation for each sequence (and alignments):
>> TCDB::Q9L651  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2     0.033     0.033      42      65 ..       7      30 ..       1      61 [. 0.64
   2 ?   -3.4  22.0      0.69      0.69      22      99 ..     178     272 ..     156     273 .. 0.55
   3 ?    0.7   8.2     0.036     0.036       1      65 [.     244     308 ..     243     314 .. 0.68
   4 !   78.3  11.4   2.4e-26   2.4e-26       2     100 .]     550     647 ..     549     647 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.033
       DUF1430 42 eyliillivlllllvlifiltkek 65
                  ++li l ivl+ ++ +i++++k k
  TCDB::Q9L651  7 RVLITLSIVLVSAFSMIIVINKHK 30
                  444544455555554554444433 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.69
       DUF1430  22 fkkkilikkifGyslfkrh.......keyliilliv.lllllvlifiltkeki.........illvvlvlllielllillvqekiekkkfisvlK 99 
                   + kk+ +++++G+s f+ +        +y++i+ i+ ll + ++++i++   i         ++++vlvllliel++ +lv   ++ +k++ v+K
  TCDB::Q9L651 178 NLKKQGVQRLAGISCFRLSflglkkrLTYIFITTIItLLTSSLILYIINLRRImyfyviifpTIFIVLVLLLIELIVGILVYLFLQRQKINLVIK 272
                   88999999999999986542222211467666555404445555555555333111111111234556666777777766666666666666666 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.036
       DUF1430   1 illlalslllivllvllYfeqfkkkilikkifGyslfkrhkeyliillivlllllvlifiltkek 65 
                   +l+l l+ l++  lv+l++++ k +++ik ++ ++++ +   +l ++ +++l+   +++  + ++
  TCDB::Q9L651 244 VLVLLLIELIVGILVYLFLQRQKINLVIKDMAPIRALMSFVFLLQLISLLCLIFSFSSISSSHKD 308
                   56667778889999999999999******999999999887666554444444333333333344 PP

  == domain 4  score: 78.3 bits;  conditional E-value: 2.4e-26
       DUF1430   2 lllalslllivllvllYfeqfkkkilikkifGyslfkrhkeyliillivlllllvlifiltkekiillvvlvlllielllillvqekiekkkfisvl 98 
                   ++l++s++l++l++ +Y++q++kk+++ +i+G slf++hk+yli+l+i++++++++ifi++ ++++l++  +l  ++l+l l++q k++k+++isvl
  TCDB::Q9L651 550 IALISSTFLFYLMNKIYLYQNRKKFAVARISGESLFTTHKTYLIQLFIIIIFAIGMIFIWHLNPLTLIIPPILGGLQLIL-LTRQIKNNKTFNISVL 645
                   7899**************************************************************************99.99999*********** PP

       DUF1430  99 KG 100
                   KG
  TCDB::Q9L651 646 KG 647
                   *9 PP



Or compare TCDB::Q9L651 to CDD or PaperBLAST