PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10078455 to PF05266 (DUF724)

VIMSS10078455 has 670 amino acids

Query:       DUF724  [M=188]
Accession:   PF05266.18
Description: Protein of unknown function (DUF724)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-75  239.9   8.5      1e-75  239.9   8.5    1.9  2  VIMSS10078455  


Domain annotation for each sequence (and alignments):
>> VIMSS10078455  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.1      0.17      0.17     146     174 ..     397     426 ..     348     439 .. 0.50
   2 !  239.9   8.5     1e-75     1e-75       2     188 .]     483     669 ..     482     669 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.17
         DUF724 146 eallk..ekkeakdkeiarlkseaekleqei 174
                    e   k  + k + +++ ++ +s +++++  +
  VIMSS10078455 397 EN-SKdgSTKRKREEKHNSASSVMDEIDGTC 426
                    11.1122333333344444444444444444 PP

  == domain 2  score: 239.9 bits;  conditional E-value: 1e-75
         DUF724   2 lPFvkksplWktlEsmevFkkvPQrPHFspLleskeelREgsAlglmvtFagllekvkklqvddsrskleslseslaeLekhGFdVkapqsrlnkL 97 
                     PF+kk+p+Wk++E++e +k++PQ+PHFspL+++ke++RE+sA+g+mvtF++ll++vk+lq+dds+skl+sls+slaeLekhGF+V+ p+sr++k+
  VIMSS10078455 483 SPFAKKLPFWKSYETDELYKSLPQSPHFSPLFKAKEDIREWSAVGMMVTFYCLLKEVKDLQLDDSSSKLSSLSSSLAELEKHGFNVTDPLSRISKV 578
                    6*********************************************************************************************** PP

         DUF724  98 lslkdkqtklleelkklekkiaeeesekrkleeeidelekkilelerqeallkekkeakdkeiarlkseaekleqeiedveleFeatasap 188
                    l l+dk++k++ee+k+lekki+ ee+e++++eee++++e+ i+e +rq+ ++kekkea+dk+i ++k++ae+++qei+d eleF++t+s+p
  VIMSS10078455 579 LPLQDKRAKKAEERKCLEKKIECEEIERKRFEEEFADFERIIIEKKRQALVAKEKKEAADKRIGEMKTCAETIDQEIKDEELEFQTTVSTP 669
                    ****************************************************************************************987 PP



Or compare VIMSS10078455 to CDD or PaperBLAST