PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10079846 to PF15697 (DUF4666)

VIMSS10079846 has 148 amino acids

Query:       DUF4666  [M=111]
Accession:   PF15697.9
Description: Domain of unknown function (DUF4666)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-42  129.0   1.9      1e-41  128.4   1.9    1.3  1  VIMSS10079846  


Domain annotation for each sequence (and alignments):
>> VIMSS10079846  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   1.9     1e-41     1e-41       1     110 [.       1     127 [.       1     128 [. 0.84

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 1e-41
        DUF4666   1 magLqRSsttFRRsGSSGlvwderll.......keeeeeeeeakeee....aeeeeeevk......elrhsrsvgsi.gslersrsnggsaqrafr 78 
                    m+gLqRS+++FRR+GSSG+v+d+rl+       ++e+++e++++  e    ++e++e+vk      +lr++++ g++ g +ersrsngg+aqr++r
  VIMSS10079846   1 MEGLQRSTISFRRQGSSGIVFDDRLIaelnksgNNEQKDESQRD--EqpkpMSESSEQVKpidekdKLRPIKTGGGApGGIERSRSNGGGAQRHHR 94 
                    99************************999886633333333333..234666777777777787779***9999887689**************** PP

        DUF4666  79 .tkkvsPavdPpSPkvsacilCgifgkkekskk 110
                     t++vsPavdPpSP++s+c++C++fgk+ ++kk
  VIMSS10079846  95 tTGRVSPAVDPPSPRISSCGCCSAFGKNPPGKK 127
                    99**************************99875 PP



Or compare VIMSS10079846 to CDD or PaperBLAST