PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10084903 to PF03478 (DUF295)

VIMSS10084903 has 362 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-27   83.1   0.0    3.1e-27   81.9   0.0    1.5  1  VIMSS10084903  


Domain annotation for each sequence (and alignments):
>> VIMSS10084903  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   3.1e-27   3.1e-27      39     250 ..      93     328 ..      57     344 .. 0.67

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 3.1e-27
         DUF295  39 vgssggwLltader..ssnlfllnpltgarieLP..plstlpve..................ellirkvvlsasps..sdyvvvlisges..ggkl 108
                     +ss+gw++  d +  s++++lln+l++   +L   ++  l  e                           sa++   ++  v +  ge+   g l
  VIMSS10084903  93 SSSSKGWMIKSDMDinSGRFRLLNVLSRYPLRLYseSIDLL--EftvseireaytvlntakrR--------SATKGyqRSAPVKVKEGEGhrDGVL 178
                    34566******99998888*******998877763322222..14456566664444333330........3322232222222222222444444 PP

         DUF295 109 afcrsgdssWttieee........gegyedvvfhkgkfYaltntgevvvldlgsdeplevsevvks.kerkylVessGelllVrrylkk....... 188
                     + r g+ ++ +   +        g++++d+++hkg +      +++ +  +g++  +   ++++  + +  +Ve +Gel++V+r  k+       
  VIMSS10084903 179 GIGRDGNINYWDG--NvlselkqmGDHFSDIIVHKGLIN-----SDLEISRFGTSLDE---NITDGcWGDLRFVEGCGELYIVERLPKNtrkrkag 264
                    4445554433222..122445556889*********987.....35555555423333...33333333789************988779999*** PP

         DUF295 189 ...eskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdfpglkgNcIYftddkk 250
                       +++rtv f+ yk+d+e  akw e+++Lgd+a+++g++ +fsv a+++ g+ +N+IY+t++++
  VIMSS10084903 265 dffHNSRTVGFKAYKMDEE-LAKWIEIKTLGDNAFLMGTDTCFSVLAHEVYGCLPNSIYYTENTW 328
                    ***99************97.789**************************************9873 PP



Or compare VIMSS10084903 to CDD or PaperBLAST