PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10085163 to PF05346 (DUF747)

VIMSS10085163 has 624 amino acids

Query:       DUF747  [M=315]
Accession:   PF05346.15
Description: Eukaryotic membrane protein family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-100  322.9   7.7   1.9e-100  322.6   7.7    1.1  1  VIMSS10085163  


Domain annotation for each sequence (and alignments):
>> VIMSS10085163  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.6   7.7  1.9e-100  1.9e-100       3     314 ..     305     610 ..     303     611 .. 0.96

  Alignments for each domain:
  == domain 1  score: 322.6 bits;  conditional E-value: 1.9e-100
         DUF747   3 ssekadllklllilvsviilsklDaSrlYHsirgqsviKLyvifnvLEvaDkLlsslgqdildalfstat........kskskllrlillfilalv 90 
                    +se++dl ++l++++ +i+l ++D+S +YH+irgqs+iKLyv++n+LE++D+L++s++ d++ alfs+a+        k + +++r++  ++l+++
  VIMSS10085163 305 ASELSDLACFLVLATGTILLGRTDISLIYHMIRGQSTIKLYVVYNILEIFDRLCQSFCGDVFGALFSSAKglsisppeKLRFSTWRFVSDLALTMA 400
                    6899******************************************************************7777766546799************* PP

         DUF747  91 yvvlHslvllyqvvtLnVavnSysnaLltLLlsnqfvEiKssVFKkfekenlfqltcaDvvERfqlllllliialrnlvelsssssseeellgell 186
                    + +lHs++ll q++tL+ ++ +++naLl+LL+sn+f+EiKssVFK+f+k+n++ l++aD +ERf+++++l+ ++++n++e      se +++g+++
  VIMSS10085163 401 ASILHSFILLAQAITLSTCIVAHNNALLALLVSNNFAEIKSSVFKRFSKDNIHGLVYADSIERFHISAFLVSVLAQNILE------SEGAWFGNFI 490
                    ********************************************************************************......799******* PP

         DUF747 187 splllvlgsEvlvDwlKHafitkFNkikpsvYrkfldvlakdllssrkkkafvdqseklarrlGlpvlplavlfirvllqtlkmllatslkllsll 282
                    +++++v+++E+++D++KH+f++kFN+ikp +Y++fl+ l++++l+ r +          +  l++++l+ a+++irvl+++++++l +s   +++l
  VIMSS10085163 491 YNATTVFFCEMMIDIIKHSFLAKFNDIKPIAYSEFLQALCEQTLNIRPE--------DRKTNLTFVPLAPACVVIRVLTPVYAAHLPYSPLPWRML 578
                    ********************************************98555........45689********************************** PP

         DUF747 283 tallllllvflillllklllgilllkvarkrv 314
                    ++++l+++++++l++lk+l+g+ l+k+a++++
  VIMSS10085163 579 WMVILFVITYIMLTSLKVLIGMGLRKHATWYI 610
                    ****************************9976 PP



Or compare VIMSS10085163 to CDD or PaperBLAST