PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10088276 to PF12263 (DUF3611)

VIMSS10088276 has 296 amino acids

Query:       DUF3611  [M=177]
Accession:   PF12263.12
Description: Protein of unknown function (DUF3611)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-57  179.4   4.1    4.2e-57  179.0   4.1    1.1  1  VIMSS10088276  


Domain annotation for each sequence (and alignments):
>> VIMSS10088276  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   4.1   4.2e-57   4.2e-57       2     176 ..     108     282 ..     107     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 4.2e-57
        DUF3611   2 palqriasalrllGwigFWlqlvlgvvsalillfallgrslaeesnaglgfglflavlglvlllfsifwafrytrlarrL..qaenpelrPkkaev 95 
                    ++l+++++ +++lG igFW qlv +vv+a+il f++++++     +++  ++++ ++ g++++++s+fw+f+y+rl++rL  ++ +p+++P++a+v
  VIMSS10088276 108 KRLEKTSRYFKRLGSIGFWGQLVSTVVAAVILSFSIVVTG-----KPTSPATFYATASGIAAAFVSVFWSFGYIRLSERLrrTSIDPAKAPPRADV 198
                    6789***********************************8.....79999******************************888889********** PP

        DUF3611  96 lqllrlGlivnlvGmllallgaqatvglLlakalsq.....pqgvavidpsklvralDvlvvqAntntilAhfvGlvvsLwLleri 176
                    ++ lr G++vn++Gm+ allg+qatvg L+akal++     +qgv+  +  + v alDv++vqA++nt+l+hf+Glv+sL Ll+++
  VIMSS10088276 199 VKGLRSGIMVNILGMGSALLGMQATVGFLVAKALTTsanpfYQGVS--QGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSV 282
                    ************************************5543223332..22466*******************************98 PP



Or compare VIMSS10088276 to CDD or PaperBLAST