PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10088395 to PF03478 (DUF295)

VIMSS10088395 has 322 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-23   67.2   0.0    1.7e-22   66.3   0.0    1.4  1  VIMSS10088395  


Domain annotation for each sequence (and alignments):
>> VIMSS10088395  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.7e-22   1.7e-22      44     205 ..      94     308 ..      47     318 .. 0.72

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.7e-22
         DUF295  44 gwLl..tader.ssnlfllnpltgarie....LPplstlpve........................................ellirkvv....ls 88 
                     +Ll  +++ +  + +fll pl++ ri     + ++  +  +                                        e  i++ v    l 
  VIMSS10088395  94 DYLLaeMREREgGEPMFLLSPLSSNRIIygmgINKV-LF--NsltspiipfgqyyeitysekqpiryryglpchlwdklewvE--ITERVeflkLD 184
                    555545665555444999999999997645443333.12..133355566788899999999999999999999999998553..33333342243 PP

         DUF295  89 aspssdyvvvlisgesggklafcrsgdssWttieee..gegyedvvfhkgkfYaltntg..evvvldlgsdeplevsevvks..kerkylVessGe 178
                    ++ s+d++v+ + +   ++l+++rs + sWt++ e+  +  y+d+v +kgkfYal+++g  +v+v++l+  e +e+ +v  s  ++++ lV s  e
  VIMSS10088395 185 SEDSRDFAVLFAGR--MCNLVMYRSRNMSWTQVVEHpeKYAYQDLVAFKGKFYALDSSGrgRVFVVELS-LEVMEIPSVRGSqqSSKENLVLSGEE 277
                    33569**9997665..58***************9998766789**************663377777774.3444444444445333899**9999* PP

         DUF295 179 lllVrrylkk....eskrtvefeVykldlee 205
                    lllV+r++ +    +++   +f+V++ld+ee
  VIMSS10088395 278 LLLVQRFTPEvrhyDEYLYTWFRVFRLDEEE 308
                    ******988899995566689*******986 PP



Or compare VIMSS10088395 to CDD or PaperBLAST