PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10089336 to PF03478 (DUF295)

VIMSS10089336 has 336 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-23   69.2   0.0    2.6e-23   69.1   0.0    1.1  1  VIMSS10089336  


Domain annotation for each sequence (and alignments):
>> VIMSS10089336  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   2.6e-23   2.6e-23      82     249 ..     128     300 ..      29     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 2.6e-23
         DUF295  82 irkvvlsasps...sdyvvvlisgesggklafcrsgdssWttieee.gegyedvvfhkgkfYaltntgevvvldl.gsdeplevsevvks....ke 168
                     r   l  +++   +++vv+l  +  + +l++ +s++ +W+++e+   + + d+v ++g+fYal  +g++vv+d  +    lev+ +++s     e
  VIMSS10089336 128 NRATFLRLDKEgrrGEFVVLL-EV--SDTLLVLTSAEMRWKQLENVpYTICVDIVTFRGRFYALFLSGQIVVIDPyS----LEVTLLLSSpqdpRE 216
                    344445444434568888875.55..459***************99955789**********************763....333333333333322 PP

         DUF295 169 rkylVes.sGelllVrrylkk....eskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdfp...glkgNcIYftddk 249
                     + lV    +el+lV+ ++ +    +  +++  +V ++d++ ++kw+ev +Lgd +l+l    ++s+sa++fp   gl +N + f d++
  VIMSS10089336 217 LRSLVPYgKDELFLVEVIIPNdvviD-FSRLARRVRRVDEK-AGKWVEVGDLGDCVLLL---GNLSCSAKEFPrgfGLTENAVLFGDQS 300
                    5689999999******8777799963.455889******98.789**************...678999999988889********9965 PP



Or compare VIMSS10089336 to CDD or PaperBLAST