PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10090378 to PF03478 (DUF295)

VIMSS10090378 has 376 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-46  143.3   0.1      7e-46  143.0   0.1    1.0  1  VIMSS10090378  


Domain annotation for each sequence (and alignments):
>> VIMSS10090378  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.1     7e-46     7e-46       2     259 .]      51     349 ..      49     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 7e-46
         DUF295   2 Pwll.lpddeeedsst.lfslpdgklyrrlklPeg...rrrcvgssggwLltaderssnlfllnpltgarieLPplst.lpve............. 78 
                    Pw + +     ++ st lf+  ++k++ +++ P     +r +++s+ +w+l++d++  +++lln +t++ri+LP++++ +                
  VIMSS10090378  51 PWRIkF-----NKISTsLFDPREDKIH-EIQHPGIefsDRNVLASCSNWFLMVDSG-LEFYLLNAFTRERINLPSMESsI--Lgkerlekevawkh 137
                    555522.....2345559**888***9.6789988999778*************97.78****************95432..14567778888988 PP

         DUF295  79 ........ellirkvvlsas...pssdyvvvlisgesggklafcrsgdssWttieeegegyedvvfh.kgkfYaltntgevvvldlgsdeplevs. 161
                            +   ++++l  +    ++dyvv+++ +++  +l+ +++gd+sW ++e +  ++ ++++  + k+Y++  +++++++dl ++ p+e+  
  VIMSS10090378 138 fiertdiiS-TKKQACL--WineRTGDYVVAWSIKQH--YLFTYKKGDDSWLNLEGT--KCVSMALNkDYKLYVYALDNSIKIFDLYGEFPSEIVe 226
                    888887643.6788888..433356********9975..**************9955..46666666599****************5577777766 PP

         DUF295 162 ...........evvks......ke.rkylVes.sGelllVrrylkkeskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdfp.. 236
                               +          +  ++ ++ + sGe+l++++      ++++ f +yk+d+  + +we+v+sLg+++l++g++ ++  +  d+   
  VIMSS10090378 227 enpyrnhpfsfR---FvskpeeHAwKQVVAITnSGEVLMIVSLKG-L-EDKRLFYIYKMDFG-SCNWERVDSLGGEMLIFGHGVTIRAPILDINgl 316
                    666555555542...055577522334444348********8655.3.4559*********8.789**************7776666677776355 PP

         DUF295 237 glkgNcIYftddk.k.........eerdigvyd 259
                    g+k ++I f  d+ +          +  +gv+d
  VIMSS10090378 317 GIKSDSICFRGDDlWplsqlfipiTQPMCGVFD 349
                    *********887763344566666556667775 PP



Or compare VIMSS10090378 to CDD or PaperBLAST