PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10093714 to PF04859 (DUF641)

VIMSS10093714 has 472 amino acids

Query:       DUF641  [M=127]
Accession:   PF04859.16
Description: Plant protein of unknown function (DUF641)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-49  154.2   3.8    1.1e-49  154.2   3.8    1.8  2  VIMSS10093714  


Domain annotation for each sequence (and alignments):
>> VIMSS10093714  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.53      0.53      80      84 ..      46      50 ..      17      74 .. 0.53
   2 !  154.2   3.8   1.1e-49   1.1e-49       2     127 .]      78     202 ..      77     202 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.53
         DUF641 80 qeqrs 84
                   ++ ++
  VIMSS10093714 46 KKSQE 50
                   22222 PP

  == domain 2  score: 154.2 bits;  conditional E-value: 1.1e-49
         DUF641   2 raaaaealvaklFaavSalkaaYvqLQeAhvPydpekiqaADeavvseLkklselkrlylkkekkkaspeeseleaeiqeqrsllktyeivvkkle 97 
                    ++ a+eal+aklFa++S++k+ Y+qLQ+A++Pydp+ iq+AD++vv+eLk+lselk+++lkk+ ++ +p+++ + aeiqe+rs+lktyei+ kkle
  VIMSS10093714  78 KRLAMEALLAKLFATISSIKSGYAQLQYAQSPYDPNGIQKADNLVVAELKTLSELKQSFLKKQLDP-NPDRTLVLAEIQELRSVLKTYEIMGKKLE 172
                    5679**********************************************************9998.689************************** PP

         DUF641  98 selkakdseieeLrekLeeaerknkklekr 127
                    ++lk kdsei +L+ek++e+  +nk +ekr
  VIMSS10093714 173 CQLKLKDSEIIFLKEKFQESMTQNKLMEKR 202
                    ****************************98 PP



Or compare VIMSS10093714 to CDD or PaperBLAST