PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10094606 to PF03478 (DUF295)

VIMSS10094606 has 334 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-48  150.5   0.2    4.3e-48  150.3   0.2    1.0  1  VIMSS10094606  


Domain annotation for each sequence (and alignments):
>> VIMSS10094606  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.2   4.3e-48   4.3e-48       2     234 ..      63     331 ..      62     334 .] 0.84

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 4.3e-48
         DUF295   2 Pwll.lpddeeedsst.lfslpdgklyr..rlklPeg....rrrcvgssggwLltaderssnlfllnpltgarieLPplstlp.ve.......... 78 
                    Pwl+ +++   +  s+ lf+  ++k+y   +l    g    r++c+++sg+wLl+ d r ++++lln++t++ri LP l+++   +          
  VIMSS10094606  63 PWLIlFSNY--RHISCrLFDPLHDKTYVirDL----GfdfhRSCCLATSGSWLLMLDHR-TDFYLLNLFTRERICLPTLEAIDgWQmkfervgesd 151
                    9***54444..467789999545778876543....24466889*************97.89***************9987544447788999*** PP

         DUF295  79 ....................ellirkvvlsas.pssdyvvvlisgesggklafcrsgds..sWttieee.gegyedvvfhkgkfYaltntgevvvl 150
                                        +++i+++vl  +  s+dy+vv++     + +a+ ++gd+   W++i+ + +e+++d+vf + k+Y+l+ + ++ v+
  VIMSS10094606 152 flktftyregyrsyssglstKVVIENAVLWVDeRSRDYLVVWSIE---CFFAYHKKGDNnkTWKVIQLKkNEECSDIVFRESKLYVLNPNLNITVF 244
                    ****************999999*******333356*******996...56*******88556****988*99************************ PP

         DUF295 151 dlgsdeplevsevvks.........kerkylVes.sGelllVrrylkkeskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasd 234
                    d++s +p+e ++++++         ++  +lV + sGe+ll++ +    ++   +f+Vyk+d++ ++kw+e+ sLg++a++l  + +++++a+d
  VIMSS10094606 245 DFSSGSPNECASFTSQdigltlyplSCFGHLVITlSGEVLLIKTR----RYGIYSFDVYKMDPK-SSKWREIYSLGNEAILL--DLGTTIAAKD 331
                    **888998888655556788888886667999889*******953....56789*********8.569**************..*****99998 PP



Or compare VIMSS10094606 to CDD or PaperBLAST