PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10098253 to PF07933 (DUF1681)

VIMSS10098253 has 302 amino acids

Query:       DUF1681  [M=158]
Accession:   PF07933.18
Description: Protein of unknown function (DUF1681)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-57  178.2   2.9    8.6e-57  177.4   0.1    2.1  2  VIMSS10098253  


Domain annotation for each sequence (and alignments):
>> VIMSS10098253  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.1   8.6e-57   8.6e-57       1     158 []      32     192 ..      32     192 .. 0.91
   2 ?    0.6   0.8     0.022     0.022     122     150 ..     262     285 ..     252     287 .. 0.51

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 8.6e-57
        DUF1681   1 iervllvakevhvYkippltsskgyraadWtakepiwtgrlrvvekgkkvdikLedkktgelfaaapve.tkeaavekvlDSsRyFvlrvedek.. 93 
                    ie  l+ ++e++vY ipp++++++yra++W+ +++ w+g l+vv+kg+++ ikL dk+tgel+a+a ++  + + ve+v+DSsRyFvlrve++   
  VIMSS10098253  32 IEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLVDKTTGELYAQAFLReGELHPVEAVIDSSRYFVLRVEEKIdg 127
                    57789***************************************************************9555566***************987554 PP

        DUF1681  94 .grkaflGigFeeRsdafdfnvalqdaekrlkkekeaeekekeeeekkekkdysLkeGetikinlg 158
                      r+af+G+gF+eR++a+df++al+d+ k+l+k+k+aee+e++ ++++ ++dysLkeGeti ++l+
  VIMSS10098253 128 rVRHAFIGLGFRERTEAYDFQAALHDHMKYLNKKKTAEEMEQHYQNTS-SVDYSLKEGETIVLQLK 192
                    479*********************************998555555555.9***********99885 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.022
        DUF1681 122 rlkkekeaeekekeeeekkekkdysLkeG 150
                    +++ ++     ++eeee+++k+d++ k+G
  VIMSS10098253 262 QQDLDT-----KREEEEEEKKEDLKAKDG 285
                    222222.....333444444689999988 PP



Or compare VIMSS10098253 to CDD or PaperBLAST