PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10098627 to PF09740 (DUF2043)

VIMSS10098627 has 664 amino acids

Query:       DUF2043  [M=106]
Accession:   PF09740.13
Description: Uncharacterized conserved protein (DUF2043)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-33   99.8   0.0    7.1e-33   99.8   0.0    2.5  3  VIMSS10098627  


Domain annotation for each sequence (and alignments):
>> VIMSS10098627  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       0.6       0.6      14      40 ..     342     367 ..     331     393 .. 0.51
   2 !   99.8   0.0   7.1e-33   7.1e-33       2     104 ..     410     510 ..     409     512 .. 0.92
   3 ?   -2.5   0.2      0.47      0.47      52      52 ..     600     600 ..     551     634 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.6
        DUF2043  14 yWgeeekavkvlkneseehrfwkeadv 40 
                     W+e++ +vk    ++   + ++++++
  VIMSS10098627 342 IWEEDDGKVKTDSVKNV-AHVMRTQQS 367
                    46655533332222222.233233332 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 7.1e-33
        DUF2043   2 kapvvpfgldLkyWgeeekavkvlknese..ehrfwkeadveeviskeklaelksraitfagkaeevkkkCraplknGkLCeRrDllkCPfHGkii 95 
                    +apv+++g++L++W++++   +v +n ++   + +w+++d++++i+++k+ael+ +a++++++++e+  +Cra lk+G+LC+RrDl++CPfHG+i+
  VIMSS10098627 410 EAPVMNWGSQLTNWESTT---EVRANYRGleIESHWGRVDQDAIIPADKIAELNLQATVYREERTET-PPCRASLKKGGLCQRRDLRVCPFHGPIV 501
                    79*************988...677777766656667*****************************99.**************************** PP

        DUF2043  96 pRDdeGkpi 104
                    pRDdeG+ i
  VIMSS10098627 502 PRDDEGNTI 510
                    ******987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.47
        DUF2043  52 l 52 
                    +
  VIMSS10098627 600 M 600
                    1 PP



Or compare VIMSS10098627 to CDD or PaperBLAST