PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10100709 to PF03478 (Beta-prop_KIB1-4)

VIMSS10100709 has 442 amino acids

Query:       Beta-prop_KIB1-4  [M=242]
Accession:   PF03478.24
Description: KIB1-4 beta-propeller
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-47  146.5   0.9    6.9e-47  146.1   0.9    1.2  1  VIMSS10100709  


Domain annotation for each sequence (and alignments):
>> VIMSS10100709  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.9   6.9e-47   6.9e-47       2     241 ..     130     404 ..     129     405 .. 0.83

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 6.9e-47
  Beta-prop_KIB1-4   2 fslpdkklyrlrlpe.elrgsrcvgssggWLllvdssselfLlnpltgarieLPpletlp..............arevvirkvvLsadpskss 79 
                       +++ d++ y +r    +l++src++ssg+W+l++d+++++++ln++t+ ri+LPple+                 + + i+++vL++d+ k +
     VIMSS10100709 130 YNPRDHSSYIVRDLGfDLARSRCLASSGSWFLMLDHRTDFHILNLFTRVRIPLPPLESTGdgnvfkrvyenvsdGSCIKIDNAVLWVDE-KRR 221
                       777787777666444799*****************99*******************9988****99999999764345666********.*** PP

  Beta-prop_KIB1-4  80 dyvvlvihssaggklafcrpgd..ssWtkieere..sgyedvvfhdgkfYaltkkgsvvvfdls.gdspsrleeelPp...........eakk 156
                       dy+v++  s+    + ++++gd   sW++++  +   ++ d++f+++k+Y+l+ +++v+v+d+s gdsp ++  ++P+           ++++
     VIMSS10100709 222 DYLVVWNISR---LFGYHKKGDenYSWKVFKPLKknDCCIDMAFKENKLYVLSVTRKVTVYDFSgGDSPVKC-ATFPSlrfrngysyntQGCH 310
                       ****988777...599*****98888999988779999**************************55555333.46777778888898866666 PP

  Beta-prop_KIB1-4 157 rkyLVessGeLllVrr.esdasertvefeVykldlekerWeevesLGdralFlgknssvsvsasefpglkgncIYft.D.............. 233
                        k  V++sGe+l++    +   + ++ f Vyk+d +++ +e++ sLG++al+l+ +++v +       +++ncIYf+ D              
     VIMSS10100709 311 YKVAVTLSGEVLIIVAkVEPYPRVECFFAVYKMDHNSSGYERI-SLGGEALLLDLGITVEA------NCMKNCIYFSnDqfhryngkslcdds 396
                       6666999***88774434456667889**********999988.8***********77655......5999******7477777777777789 PP

  Beta-prop_KIB1-4 234 eerdigvy 241
                       ++++i+vy
     VIMSS10100709 397 NKNGICVY 404
                       99999999 PP



Or compare VIMSS10100709 to CDD or PaperBLAST