PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10100910 to PF03478 (Beta-prop_KIB1-4)

VIMSS10100910 has 379 amino acids

Query:       Beta-prop_KIB1-4  [M=242]
Accession:   PF03478.24
Description: KIB1-4 beta-propeller
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-31   94.1   0.1    7.5e-31   93.5   0.1    1.1  1  VIMSS10100910  


Domain annotation for each sequence (and alignments):
>> VIMSS10100910  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   7.5e-31   7.5e-31      50     242 .]     117     348 ..      93     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 7.5e-31
  Beta-prop_KIB1-4  50 rieLPpletlparevvirkvvLsadpskssdyvvlvihssaggklafcrp.gdssWtkieere...sgyedvvfh..dgkfYaltkkgsv.vv 135
                       +i+LP++       + i++ ++s+ p +++d+vv  ++ s+ +++++crp g+s+W++++ ++   + +++++f   d++fY+ ++ g+    
     VIMSS10100910 117 TIHLPSVP----TGTKIHNLAMSSIPVQDKDWVV-GVKLSG-SRVSLCRPfGSSKWINMKFMSqciNPLSSLMFSkrDQRFYIPSYGGNYlCY 203
                       58899883....46789*****************.445553.8******************9999999999999966669********66155 PP

  Beta-prop_KIB1-4 136 fdlsgdsp..........srle........eelPp..........eakkrkyLVes.sGeLllVrr.........esdasertvefeVykldl 190
                       +dl++++              +        e+lP+          ++ k+ +LVes +G+L+lV+          +++ ++ t++f+V+++++
     VIMSS10100910 204 LDLNSKEGddhfnsrqenG--QpsfidldyENLPEsvfkqlagvsSCSKTDHLVESpTGQLFLVKWfvedvedlcDNTPMHVTKKFMVFRANE 294
                       5888777777787554440..0444557777788899********9******************77899999999778999**********66 PP

  Beta-prop_KIB1-4 191 ek....erWeevesLGdralFlgknssvsvsasefpglkgncIYftDeerdigvyd 242
                        +    ++    e++Gd ++Flg+  +++++as   gl++ncIYf+   ++ gvyd
     VIMSS10100910 295 ASdekkKTMIYTEHIGDLCIFLGHSEAFCIPASTSCGLEPNCIYFV--GNNFGVYD 348
                       6665545555889*********************99**********..57999997 PP



Or compare VIMSS10100910 to CDD or PaperBLAST