PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10103913 to PF04783 (DUF630)

VIMSS10103913 has 657 amino acids

Query:       DUF630  [M=59]
Accession:   PF04783.16
Description: Protein of unknown function (DUF630)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-28   84.6   3.1    2.2e-28   84.6   3.1    3.4  4  VIMSS10103913  


Domain annotation for each sequence (and alignments):
>> VIMSS10103913  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   3.1   2.2e-28   2.2e-28       1      59 []       9      70 ..       9      70 .. 0.96
   2 ?   -1.4   0.2      0.15      0.15      20      40 ..     398     418 ..     398     427 .. 0.79
   3 ?   -0.2   0.0     0.063     0.063      21      54 ..     506     539 ..     495     543 .. 0.81
   4 ?   -2.2   0.0      0.27      0.27      15      26 ..     571     582 ..     568     584 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 2.2e-28
         DUF630  1 MGcaaSkl...ddeeavalCreRkrllkqaveaRyaLAaaHvaYlqSLrnvgaaLrrFaeee 59
                   MGc++Sk+   +++e ++lC+eRkr++kqa+++R+aLAaaHv+Y++SLrn+ga+Lr++ae+e
  VIMSS10103913  9 MGCSNSKAsmnKKNEPLHLCKERKRFVKQAMDSRCALAAAHVSYIRSLRNIGACLRQYAEAE 70
                   ********776678*********************************************987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.15
         DUF630  20 RkrllkqaveaRyaLAaaHva 40 
                    Rk++ ++  + R+++A+ H a
  VIMSS10103913 398 RKEYDRKCEQLRNQFAKDHSA 418
                    66666777788******9986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.063
         DUF630  21 krllkqaveaRyaLAaaHvaYlqSLrnvgaaLrr 54 
                    +r+l +++e+   +  + v+ ++S+++  +aL+ 
  VIMSS10103913 506 RRILAELLEETECFGLSFVDLVHSMASYVEALNG 539
                    6778888888888888888888888888888875 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.27
         DUF630  15 alCreRkrllkq 26 
                     lCr++ + +k+
  VIMSS10103913 571 VLCRDWSAGIKT 582
                    59****998886 PP



Or compare VIMSS10103913 to CDD or PaperBLAST