VIMSS10107519 has 640 amino acids
Query: PDH_N [M=154]
Accession: PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-25 74.3 0.0 3.3e-14 38.8 0.0 2.3 2 VIMSS10107519
Domain annotation for each sequence (and alignments):
>> VIMSS10107519
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.1 0.0 2e-12 2e-12 20 108 .. 83 173 .. 67 183 .. 0.84
2 ! 38.8 0.0 3.3e-14 3.3e-14 3 113 .. 381 489 .. 379 528 .. 0.87
Alignments for each domain:
== domain 1 score: 33.1 bits; conditional E-value: 2e-12
PDH_N 20 deekakaalelglvdeatddieavkea.divllavPvevilevlkelap.hlkedalitDvgsvKekvvkelekllk.gksfvgghPmaGte 108
+++aa++lg+ + + + + d+vll++ + i+++lk l l+++ l +Dv svKe l + l+ + +hPm+G++
VIMSS10107519 83 RSDHSSAARRLGVSYFTDL-HDLCERHpDVVLLCTSILSIENILKTLPFqRLRRNTLFVDVLSVKEFAKTLLLQYLPeDFDILCTHPMFGPQ 173
445778889****998877.46665556******************97658**************************999**********94 PP
== domain 2 score: 38.8 bits; conditional E-value: 3.3e-14
PDH_N 3 ralrrkgfkvtvigydideekakaalelglvdeatddieavkea.divllavPvevilevlkelap.hlkedalitDvgsvKekvvkelekllk.g 95
+ + ++g +tv y++++ + +aa +lg+ + + d + +e ++++l++ + +++vl+ l lk++ l +Dv svKe + + + l+
VIMSS10107519 381 KTMVKQG--HTVLAYSRSDYTDEAA-KLGVSYFSDLD-DLFEEHpEVIILCTSILSTEKVLESLPFqRLKRSTLFVDVLSVKEFPRNLFLQTLPqD 472
5566777..9**********99999.*****999987.7777767******************97658**************************99 PP
PDH_N 96 ksfvgghPmaGteksGvd 113
+ +hPm+G+ +sG +
VIMSS10107519 473 FDILCTHPMFGP-ESGKN 489
9***********.66654 PP
Or compare VIMSS10107519 to CDD or PaperBLAST